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Note, if you are getting an error, it may be due to improper pathing in filamentous_fungi_250_trees.txt. To demonstrate how to identify polytomies, we will use a subset of 250 gene phylogenies fromSteenwyk et al. 2019. Higher treeness/RCV values are thought to be desirable becausethey harbor a high signal-to-noise ratio are least susceptibleto composition bias. Higher treeness values are thought to be desirable because theyrepresent a higher signal-to-noise ratio. To obtain all patristic distances, use the -v/–verbose option.With the -v option, the first column will have two taxon namesseparated by a ‘-’ followed by the patristic distance.
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